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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TCF4
wikigenes
PDBj
CellType: JHH-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX431468
Illumina NovaSeq 6000 paired end sequencing of SAMD00582830
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TCF4
Cell type
Cell type Class
Liver
Cell type
JHH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular
Attributes by original data submitter
Sample
sample_name
JHH7_TCF4
age
not applicable
antibody
TCF4
biomaterial_provider
Japanese Collection of Research Bioresources (Osaka, Japan)
cell_line
JHH7
isolate
not applicable
sex
not applicable
tissue
not applicable
collection_date
missing
geo_loc_name
missing
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina NovaSeq 6000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
47533100
Reads aligned (%)
91.4
Duplicates removed (%)
13.0
Number of peaks
1543 (qval < 1E-05)
hg19
Number of total reads
47533100
Reads aligned (%)
90.8
Duplicates removed (%)
13.3
Number of peaks
1046 (qval < 1E-05)
Base call quality data from
DBCLS SRA