DRX431468
Illumina NovaSeq 6000 paired end sequencing of SAMD00582830

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TCF4

Cell type

Cell type Class
Liver
Cell type
JHH-7
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

sample_name
JHH7_TCF4
age
not applicable
antibody
TCF4
biomaterial_provider
Japanese Collection of Research Bioresources (Osaka, Japan)
cell_line
JHH7
isolate
not applicable
sex
not applicable
tissue
not applicable
collection_date
missing
geo_loc_name
missing

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47533100
Reads aligned (%)
91.4
Duplicates removed (%)
13.0
Number of peaks
1543 (qval < 1E-05)

hg19

Number of total reads
47533100
Reads aligned (%)
90.8
Duplicates removed (%)
13.3
Number of peaks
1046 (qval < 1E-05)

Base call quality data from DBCLS SRA